STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lxx12030Protein phosphatase; Identified by sequence similarity. (260 aa)    
Predicted Functional Partners:
pknB
Serine/threonine kinase; Identified by sequence similarity.
 
 0.968
pkaF
Serine/threonine kinase; Identified by sequence similarity.
 
 0.968
Lxx12040
Serine/threonine kinase; Identified by sequence similarity.
 
 
 0.936
pknK
Serine/threonine kinase; Identified by sequence similarity.
 
 
 0.894
pknA
Serine/threonine kinase; Identified by sequence similarity.
 
 0.886
Lxx19030
Serine/threonine kinase; Identified by sequence similarity.
 
 0.858
ftsW
Cell division membrane protein; Identified by sequence similarity; Belongs to the SEDS family.
  
 0.818
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.710
Lxx12015
Conserved hypothetical protein; Identified by sequence similarity.
  
   0.683
Lxx00230
Penicillin binding protein, transpeptidase domain; Identified by sequence similarity.
 
  
 0.614
Your Current Organism:
Leifsonia xyli CTCB07
NCBI taxonomy Id: 281090
Other names: L. xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli CTCB07, Leifsonia xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli strain CTCB07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.