STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppBABC transporter, permease protein; Identified by sequence similarity. (488 aa)    
Predicted Functional Partners:
oppC
ABC transporter, permease protein; Identified by sequence similarity.
  
 0.968
oppA-2
Dipeptide porter; Identified by sequence similarity.
 
 
 0.923
moaD
ABC transporter, ATP-binding protein; Identified by sequence similarity.
 
 0.848
dppF
Oligopeptide porter; Identified by sequence similarity; Belongs to the ABC transporter superfamily.
  
 0.840
dppF-2
Oligopeptide porter; Identified by sequence similarity.
  
 0.770
Lxx16370
Integral membrane protein; Identified by sequence similarity.
  
     0.766
dppC-2
ABC transporter, permease protein; Identified by sequence similarity.
  
 0.748
dppD
ABC transporter, ATP-binding protein; Identified by sequence similarity; Belongs to the ABC transporter superfamily.
  
 0.746
oppF
Oligopeptide porter; Identified by sequence similarity.
 
 0.631
yuxL
Acylaminoacyl-peptidase; Identified by sequence similarity.
 
     0.624
Your Current Organism:
Leifsonia xyli CTCB07
NCBI taxonomy Id: 281090
Other names: L. xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli CTCB07, Leifsonia xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli strain CTCB07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.