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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW33815.1ATP-dependent endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)    
Predicted Functional Partners:
APW33816.1
DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.950
traQ
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
APW33814.1
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
traN
Conjugative transposon protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.450
traO
Conjugal transfer protein TraO; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
traP
DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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