A0A267EW06 protein (Macrostomum lignano) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A267EW06

Uncharacterized protein. (593 aa)

Predicted Functional Partners:

A0A1I8HC64

0.878

A0A267EB57

0.529

A0A267FU52

0.529

A0A267DM30

0.491

A0A267FR94

0.491

A0A267GNN2

0.491

A0A267DJY1

0.449

A0A267F8K8

0.449

A0A267FWD6

0.449

Your Current Organism:

Macrostomum lignano

NCBI taxonomy Id: 282301
Other names: M. lignano

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1I8HC64	A0A267EW06	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.878
A0A267DJY1	A0A267EW06	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A267DM30	A0A267EW06	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A267EB57	A0A267EW06	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A267EW06	A0A1I8HC64	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.878
A0A267EW06	A0A267DJY1	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A267EW06	A0A267DM30	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A267EW06	A0A267EB57	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A267EW06	A0A267F8K8	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A267EW06	A0A267FR94	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A267EW06	A0A267FU52	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A267EW06	A0A267FWD6	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A267EW06	A0A267GNN2	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A267F8K8	A0A267EW06	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A267FR94	A0A267EW06	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A267FU52	A0A267EW06	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A267FWD6	A0A267EW06	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A267GNN2	A0A267EW06	Uncharacterized protein.	Uncharacterized protein.	0.491