SDC80535.1 protein (Geotoga petraea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDC80535.1

Diguanylate cyclase (GGDEF) domain-containing protein. (732 aa)

Predicted Functional Partners:

SDC35695.1

0.999

SDC83806.1

0.998

SDC84751.1

0.998

SDC37787.1

0.994

SDC34600.1

0.993

SDC35488.1

0.992

SDC84528.1

0.985

SDC75149.1

0.983

ribA

0.974

SDC75317.1

0.968

Your Current Organism:

Geotoga petraea

NCBI taxonomy Id: 28234
Other names: ATCC 51226, G. petraea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDC34600.1	SDC35488.1	SAMN04488588_0892	SAMN04488588_0920	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Signal transduction histidine kinase.	0.979
SDC34600.1	SDC35695.1	SAMN04488588_0892	SAMN04488588_0927	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	GAF domain-containing protein.	0.997
SDC34600.1	SDC37787.1	SAMN04488588_0892	SAMN04488588_0994	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.997
SDC34600.1	SDC75149.1	SAMN04488588_0892	SAMN04488588_1725	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	GAF domain-containing protein.	0.911
SDC34600.1	SDC75317.1	SAMN04488588_0892	SAMN04488588_1729	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Adenylate cyclase.	0.874
SDC34600.1	SDC80535.1	SAMN04488588_0892	SAMN04488588_1839	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.993
SDC34600.1	SDC83806.1	SAMN04488588_0892	SAMN04488588_1905	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.997
SDC34600.1	SDC84528.1	SAMN04488588_0892	SAMN04488588_1926	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	HD domain-containing protein.	0.962
SDC34600.1	SDC84751.1	SAMN04488588_0892	SAMN04488588_1933	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.989
SDC34600.1	ribA	SAMN04488588_0892	SAMN04488588_2058	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.	0.826
SDC35488.1	SDC34600.1	SAMN04488588_0920	SAMN04488588_0892	Signal transduction histidine kinase.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.979
SDC35488.1	SDC35695.1	SAMN04488588_0920	SAMN04488588_0927	Signal transduction histidine kinase.	GAF domain-containing protein.	0.999
SDC35488.1	SDC37787.1	SAMN04488588_0920	SAMN04488588_0994	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.999
SDC35488.1	SDC75149.1	SAMN04488588_0920	SAMN04488588_1725	Signal transduction histidine kinase.	GAF domain-containing protein.	0.976
SDC35488.1	SDC75317.1	SAMN04488588_0920	SAMN04488588_1729	Signal transduction histidine kinase.	Adenylate cyclase.	0.983
SDC35488.1	SDC80535.1	SAMN04488588_0920	SAMN04488588_1839	Signal transduction histidine kinase.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.992
SDC35488.1	SDC83806.1	SAMN04488588_0920	SAMN04488588_1905	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.999
SDC35488.1	SDC84528.1	SAMN04488588_0920	SAMN04488588_1926	Signal transduction histidine kinase.	HD domain-containing protein.	0.996
SDC35488.1	SDC84751.1	SAMN04488588_0920	SAMN04488588_1933	Signal transduction histidine kinase.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.999
SDC35488.1	ribA	SAMN04488588_0920	SAMN04488588_2058	Signal transduction histidine kinase.	3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.	0.970