Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ARNT | THRA | ENSACAP00000011720 | ENSACAP00000002906 | Aryl hydrocarbon receptor nuclear translocator. | Thyroid hormone receptor alpha. | 0.667 |
ATRN | HIF1AN | ENSACAP00000004395 | ENSACAP00000010798 | Attractin. | Hypoxia inducible factor 1 subunit alpha inhibitor. | 0.477 |
ATRN | THRA | ENSACAP00000004395 | ENSACAP00000002906 | Attractin. | Thyroid hormone receptor alpha. | 0.529 |
HIF1AN | ATRN | ENSACAP00000010798 | ENSACAP00000004395 | Hypoxia inducible factor 1 subunit alpha inhibitor. | Attractin. | 0.477 |
HIF1AN | THRA | ENSACAP00000010798 | ENSACAP00000002906 | Hypoxia inducible factor 1 subunit alpha inhibitor. | Thyroid hormone receptor alpha. | 0.610 |
LOC100566411 | MED1 | ENSACAP00000006630 | ENSACAP00000017262 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.775 |
LOC100566411 | NCOR2 | ENSACAP00000006630 | ENSACAP00000014806 | Uncharacterized protein. | Nuclear receptor corepressor 2. | 0.741 |
LOC100566411 | RXRA | ENSACAP00000006630 | ENSACAP00000007838 | Uncharacterized protein. | Retinoid X receptor alpha. | 0.573 |
LOC100566411 | THRA | ENSACAP00000006630 | ENSACAP00000002906 | Uncharacterized protein. | Thyroid hormone receptor alpha. | 0.544 |
LOC100566411 | ncor1 | ENSACAP00000006630 | ENSACAP00000014637 | Uncharacterized protein. | Uncharacterized protein. | 0.741 |
MED1 | LOC100566411 | ENSACAP00000017262 | ENSACAP00000006630 | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.775 |
MED1 | NCOR2 | ENSACAP00000017262 | ENSACAP00000014806 | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Nuclear receptor corepressor 2. | 0.598 |
MED1 | NR1D2 | ENSACAP00000017262 | ENSACAP00000011193 | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Nuclear receptor subfamily 1 group D member 2. | 0.776 |
MED1 | RXRA | ENSACAP00000017262 | ENSACAP00000007838 | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Retinoid X receptor alpha. | 0.902 |
MED1 | THRA | ENSACAP00000017262 | ENSACAP00000002906 | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Thyroid hormone receptor alpha. | 0.679 |
MED1 | ncor1 | ENSACAP00000017262 | ENSACAP00000014637 | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.598 |
NCOR2 | LOC100566411 | ENSACAP00000014806 | ENSACAP00000006630 | Nuclear receptor corepressor 2. | Uncharacterized protein. | 0.741 |
NCOR2 | MED1 | ENSACAP00000014806 | ENSACAP00000017262 | Nuclear receptor corepressor 2. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.598 |
NCOR2 | NR1D2 | ENSACAP00000014806 | ENSACAP00000011193 | Nuclear receptor corepressor 2. | Nuclear receptor subfamily 1 group D member 2. | 0.813 |
NCOR2 | RXRA | ENSACAP00000014806 | ENSACAP00000007838 | Nuclear receptor corepressor 2. | Retinoid X receptor alpha. | 0.908 |
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