STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPGRIP1RPGR interacting protein 1. (1256 aa)    
Predicted Functional Partners:
rpgr
Uncharacterized protein.
    
 
 0.965
NPHP4
Nephrocystin 4.
    
 0.947
RCC1
Regulator of chromosome condensation 1.
    
 
 0.800
NPHP1
Nephrocystin 1.
    
 0.645
WHRN
Whirlin.
      
 0.625
CEP290
Centrosomal protein 290.
    
 0.622
SPATA7
Spermatogenesis associated 7.
   
 
 0.602
RPE65
Retinoid isomerohydrolase RPE65.
     
 0.577
FOXRED1
FAD dependent oxidoreductase domain containing 1.
      
 0.573
YARS2
Tyrosine--tRNA ligase.
      
 0.564
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.