STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RABGGTARab geranylgeranyltransferase subunit alpha. (449 aa)    
Predicted Functional Partners:
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.999
chm
Uncharacterized protein.
   
 0.990
RAB39A
RAB39A, member RAS oncogene family.
    
 0.817
RAB22A
RAB22A, member RAS oncogene family.
    
 0.809
RAB31
RAB31, member RAS oncogene family.
    
 0.776
RAB24
RAB24, member RAS oncogene family.
    
 0.746
LOC100566712
Uncharacterized protein.
    
 0.728
RAB1B
RAB1B, member RAS oncogene family.
    
 0.728
RAB43
RAB43, member RAS oncogene family.
    
 0.711
RABL6
RAB, member RAS oncogene family like 6.
    
 0.699
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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