STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcdh20Uncharacterized protein. (960 aa)    
Predicted Functional Partners:
CHMP2B
Charged multivesicular body protein 2B.
      
 0.655
NDNF
Neuron derived neurotrophic factor.
      
 0.654
SYT4
Synaptotagmin 4.
      
 0.582
LRRN1
Leucine rich repeat neuronal 1.
      
 0.561
GPR88
G protein-coupled receptor 88.
      
 0.504
LIX1
Limb and CNS expressed 1.
   
 0.434
BRICD5
BRICHOS domain containing 5.
      
 0.433
GDNF
Glial cell derived neurotrophic factor.
      
 0.424
TAFA4
TAFA chemokine like family member 4.
      
 0.414
FAM102B
Family with sequence similarity 102 member B.
      
 0.405
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.