STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM42RNA binding motif protein 42. (450 aa)    
Predicted Functional Partners:
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.928
haus6
HAUS augmin like complex subunit 6.
   
 0.915
G1KIN8_ANOCA
Uncharacterized protein.
    
 0.914
HAUS1
HAUS augmin like complex subunit 1.
   
 0.910
HAUS7
HAUS augmin like complex subunit 7.
    
 0.893
PRPF3
Pre-mRNA processing factor 3.
   
  0.840
PRPF31
Pre-mRNA processing factor 31.
   
 0.817
USP39
Ubiquitin specific peptidase 39.
    
  0.816
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
 0.814
haus4
Uncharacterized protein.
   
 0.798
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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