STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP5Ubiquitin carboxyl-terminal hydrolase. (832 aa)    
Predicted Functional Partners:
rps27a
Ubiquitin-like domain-containing protein.
    
 0.959
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.939
H9GK63_ANOCA
Uncharacterized protein.
    
 0.905
ubc
Uncharacterized protein.
    
 0.905
H9GRS7_ANOCA
Ubiquitin-like domain-containing protein.
    
 0.831
RPA1
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
 
      0.731
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 
 0.720
ZFAND4
Zinc finger AN1-type containing 4.
    
 0.720
UBL4A
Ubiquitin like 4A.
    
 0.716
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.716
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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