STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPUSD3RNA pseudouridine synthase D3. (351 aa)    
Predicted Functional Partners:
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
  
 
 0.783
mrm3
SpoU_sub_bind domain-containing protein.
  
 
 0.724
MRPL21
Mitochondrial ribosomal protein L21.
  
   0.713
MRPL17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.712
RPL23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.711
PUS7
Pseudouridine synthase 7.
    
 
 0.710
GTPBP8
GTP binding protein 8 (putative).
   
 
 0.690
MTG1
Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
   
 
 0.685
MRPL47
Mitochondrial ribosomal protein L47.
    
 
 0.679
MRPL3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.666
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
Server load: low (32%) [HD]