STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLN6CLN6 transmembrane ER protein. (173 aa)    
Predicted Functional Partners:
cln5
Uncharacterized protein.
  
   
 0.758
CALML4
Calmodulin like 4.
 
   
  0.741
cln8
TLC domain-containing protein.
      
 0.681
cln3
Battenin.
      
 0.680
PPT1
Palmitoyl-protein thioesterase 1.
      
 0.678
MFSD8
Major facilitator superfamily domain containing 8.
      
 0.600
TPP1
Tripeptidyl peptidase 1.
     
 0.562
VCL
Vinculin.
   
 
 0.474
ITGB6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.462
ARSG
Arylsulfatase G.
      
 0.442
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.