LOC100555209 protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100555209

Aldo_ket_red domain-containing protein. (301 aa)

Predicted Functional Partners:

GCLC

0.660

RHOB

0.569

FABP5

0.519

KCNAB1

0.458

Kcnab2

0.458

KCNAB3

0.458

AKR7L

0.458

MMADHC

0.449

PRDX4

0.437

CTSA

0.436

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKR7L	LOC100555209	ENSACAP00000010596	ENSACAP00000011580	Aldo-keto reductase family 7 like (gene/pseudogene).	Aldo_ket_red domain-containing protein.	0.458
CTSA	LOC100555209	ENSACAP00000013885	ENSACAP00000011580	Carboxypeptidase; Belongs to the peptidase S10 family.	Aldo_ket_red domain-containing protein.	0.436
FABP5	LOC100555209	ENSACAP00000013312	ENSACAP00000011580	Fatty acid binding protein 5; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Aldo_ket_red domain-containing protein.	0.519
GCLC	LOC100555209	ENSACAP00000008311	ENSACAP00000011580	Glutamate-cysteine ligase catalytic subunit.	Aldo_ket_red domain-containing protein.	0.660
KCNAB1	LOC100555209	ENSACAP00000001338	ENSACAP00000011580	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	Aldo_ket_red domain-containing protein.	0.458
KCNAB3	LOC100555209	ENSACAP00000004133	ENSACAP00000011580	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	Aldo_ket_red domain-containing protein.	0.458
Kcnab2	LOC100555209	ENSACAP00000002830	ENSACAP00000011580	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.458
LOC100555209	AKR7L	ENSACAP00000011580	ENSACAP00000010596	Aldo_ket_red domain-containing protein.	Aldo-keto reductase family 7 like (gene/pseudogene).	0.458
LOC100555209	CTSA	ENSACAP00000011580	ENSACAP00000013885	Aldo_ket_red domain-containing protein.	Carboxypeptidase; Belongs to the peptidase S10 family.	0.436
LOC100555209	FABP5	ENSACAP00000011580	ENSACAP00000013312	Aldo_ket_red domain-containing protein.	Fatty acid binding protein 5; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.519
LOC100555209	GCLC	ENSACAP00000011580	ENSACAP00000008311	Aldo_ket_red domain-containing protein.	Glutamate-cysteine ligase catalytic subunit.	0.660
LOC100555209	KCNAB1	ENSACAP00000011580	ENSACAP00000001338	Aldo_ket_red domain-containing protein.	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	0.458
LOC100555209	KCNAB3	ENSACAP00000011580	ENSACAP00000004133	Aldo_ket_red domain-containing protein.	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	0.458
LOC100555209	Kcnab2	ENSACAP00000011580	ENSACAP00000002830	Aldo_ket_red domain-containing protein.	Uncharacterized protein.	0.458
LOC100555209	MMADHC	ENSACAP00000011580	ENSACAP00000003496	Aldo_ket_red domain-containing protein.	Metabolism of cobalamin associated D.	0.449
LOC100555209	PRDX4	ENSACAP00000011580	ENSACAP00000007342	Aldo_ket_red domain-containing protein.	Peroxiredoxin 4.	0.437
LOC100555209	RHOB	ENSACAP00000011580	ENSACAP00000010462	Aldo_ket_red domain-containing protein.	Ras homolog family member B.	0.569
MMADHC	LOC100555209	ENSACAP00000003496	ENSACAP00000011580	Metabolism of cobalamin associated D.	Aldo_ket_red domain-containing protein.	0.449
PRDX4	LOC100555209	ENSACAP00000007342	ENSACAP00000011580	Peroxiredoxin 4.	Aldo_ket_red domain-containing protein.	0.437
RHOB	LOC100555209	ENSACAP00000010462	ENSACAP00000011580	Ras homolog family member B.	Aldo_ket_red domain-containing protein.	0.569