tgm2 protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tgm2

TGc domain-containing protein. (697 aa)

Predicted Functional Partners:

F13B

0.510

G1KFD8_ANOCA

0.456

RHAG

0.456

FN1

0.453

f2

0.427

TSG101

0.419

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F13B	f2	ENSACAP00000009109	ENSACAP00000003746	Coagulation factor XIII B chain.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.829
F13B	tgm2	ENSACAP00000009109	ENSACAP00000013104	Coagulation factor XIII B chain.	TGc domain-containing protein.	0.510
FN1	f2	ENSACAP00000015631	ENSACAP00000003746	Fibronectin 1.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.705
FN1	tgm2	ENSACAP00000015631	ENSACAP00000013104	Fibronectin 1.	TGc domain-containing protein.	0.453
G1KFD8_ANOCA	tgm2	ENSACAP00000006304	ENSACAP00000013104	Ammonium_transp domain-containing protein; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.	TGc domain-containing protein.	0.456
RHAG	tgm2	ENSACAP00000012219	ENSACAP00000013104	Rh associated glycoprotein; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.	TGc domain-containing protein.	0.456
TSG101	tgm2	ENSACAP00000000061	ENSACAP00000013104	Tumor susceptibility 101.	TGc domain-containing protein.	0.419
f2	F13B	ENSACAP00000003746	ENSACAP00000009109	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Coagulation factor XIII B chain.	0.829
f2	FN1	ENSACAP00000003746	ENSACAP00000015631	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Fibronectin 1.	0.705
f2	tgm2	ENSACAP00000003746	ENSACAP00000013104	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	TGc domain-containing protein.	0.427
tgm2	F13B	ENSACAP00000013104	ENSACAP00000009109	TGc domain-containing protein.	Coagulation factor XIII B chain.	0.510
tgm2	FN1	ENSACAP00000013104	ENSACAP00000015631	TGc domain-containing protein.	Fibronectin 1.	0.453
tgm2	G1KFD8_ANOCA	ENSACAP00000013104	ENSACAP00000006304	TGc domain-containing protein.	Ammonium_transp domain-containing protein; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.	0.456
tgm2	RHAG	ENSACAP00000013104	ENSACAP00000012219	TGc domain-containing protein.	Rh associated glycoprotein; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.	0.456
tgm2	TSG101	ENSACAP00000013104	ENSACAP00000000061	TGc domain-containing protein.	Tumor susceptibility 101.	0.419
tgm2	f2	ENSACAP00000013104	ENSACAP00000003746	TGc domain-containing protein.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.427