STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPG11SPG11 vesicle trafficking associated, spatacsin. (2404 aa)    
Predicted Functional Partners:
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6.
      
 0.838
ZFYVE26
Zinc finger FYVE-type containing 26.
   
 
 0.788
VPS13C
Vacuolar protein sorting 13 homolog C.
   
  
 0.737
FBXO7
F-box protein 7.
      
 0.728
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.727
AP5Z1
Adaptor related protein complex 5 subunit zeta 1.
    
 
 0.716
HTRA2
HtrA serine peptidase 2.
   
  
 0.708
synj1
SAC domain-containing protein.
      
 0.708
EIF4G1
Eukaryotic translation initiation factor 4 gamma 1.
      
 0.707
RIC3
RIC3 acetylcholine receptor chaperone.
      
 0.702
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.