STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7U0Q0_CAPTEProbable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. (806 aa)    
Predicted Functional Partners:
R7TZ84_CAPTE
Uncharacterized protein.
   
 0.969
R7U0I9_CAPTE
Uncharacterized protein.
   
 0.969
R7UJ98_CAPTE
PHD-type domain-containing protein.
    
 0.946
R7UQW3_CAPTE
Uncharacterized protein.
    
 
 0.930
R7UAA1_CAPTE
WD_REPEATS_REGION domain-containing protein.
   
 0.904
R7TDD0_CAPTE
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.903
R7UB93_CAPTE
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.903
R7UKW9_CAPTE
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.903
R7V711_CAPTE
HMG box domain-containing protein.
   
 0.895
R7USZ4_CAPTE
Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.858
Your Current Organism:
Capitella teleta
NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.