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slt protein (Idiomarina loihiensis) - STRING interaction network
"slt" - Soluble lytic murein transglycosylase in Idiomarina loihiensis
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
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Cooccurence
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[Homology]
Score
sltSoluble lytic murein transglycosylase (649 aa)    
Predicted Functional Partners:
pepQ1
Proline dipeptidase; Splits dipeptides with a prolyl residue in the C- terminal position (452 aa)
              0.838
IL0014
Hypothetical protein (205 aa)
              0.837
fadB
Fatty acid oxidation complex alpha subunit; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate (718 aa)
              0.619
polA
DNA polymerase I (921 aa)
     
 
  0.589
fadA
3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed (387 aa)
              0.573
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP (245 aa)
         
  0.568
IL1545
Thioredoxin-like domain-containing protein (180 aa)
   
          0.471
proS
Prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction- proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as ’pretransfer’ editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated ’posttransfer’ editing and involves dea [...] (567 aa)
 
          0.470
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (157 aa)
     
      0.454
fpg
Formamidopyrimidine DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3’- and 5’-phosphates (270 aa)
     
      0.451
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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