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IL0052 protein (Idiomarina loihiensis) - STRING interaction network
"IL0052" - Permease in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IL0052Permease (282 aa)    
Predicted Functional Partners:
IL0053
LysR family transcriptional regulator (298 aa)
 
          0.910
IL1154
Hypothetical protein (387 aa)
   
          0.665
IL0940
DMT superfamily permease (289 aa)
   
          0.654
IL2541
Multidrug ABC transporter ATPase and permease (610 aa)
     
      0.635
msbA
Multidrug ABC transporter ATPase and permease; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (582 aa)
     
      0.635
IL0540
Multidrug ABC transporter ATPase and permease (598 aa)
     
      0.635
cdsA
CDP-diglyceride synthetase (287 aa)
     
      0.503
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (442 aa)
     
      0.492
IL1519
Hypothetical protein (209 aa)
   
          0.472
IL0051
Transposase Tra5-like protein (114 aa)
              0.462
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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