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IL0054 protein (Idiomarina loihiensis) - STRING interaction network
"IL0054" - DNA-directed RNA polymerase specialized sigma subunit in Idiomarina loihiensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
IL0054DNA-directed RNA polymerase specialized sigma subunit (180 aa)    
Predicted Functional Partners:
rseA
Negative regulator of sigma E activity; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic prote [...] (195 aa)
   
 
  0.894
IL0055
Hypothetical protein (284 aa)
              0.859
fecR
Iron-dicitrate sensor, membrane component (319 aa)
 
 
  0.810
rseB
Negative regulator of sigma E activity (321 aa)
   
 
  0.711
IL2423
DNA-directed RNA polymerase specialized sigma factor (357 aa)
   
          0.665
chrR
Transcription negative regulator ChrR (225 aa)
     
 
  0.643
IL0065
Transcription negative regulator (215 aa)
     
 
  0.643
rpoE
RNA polymerase sigma factor RpoE (192 aa)
   
          0.537
rpoC
DNA-directed RNA polymerase beta’ subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1411 aa)
       
 
  0.504
cysE
Serine acetyltransferase (275 aa)
 
          0.466
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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