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IL0054 protein (Idiomarina loihiensis) - STRING interaction network
"IL0054" - DNA-directed RNA polymerase specialized sigma subunit in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
IL0054DNA-directed RNA polymerase specialized sigma subunit; Similar to sigma E; Belongs to the sigma-70 factor family. ECF subfamily (180 aa)    
Predicted Functional Partners:
IL0055
annotation not available (284 aa)
              0.845
rseA
Anti-sigma-E factor RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish de [...] (195 aa)
   
 
  0.592
IL2423
DNA-directed RNA polymerase specialized sigma factor; Sigma E-like; Belongs to the sigma-70 factor family. ECF subfamily (357 aa)
   
          0.531
flgJ
annotation not available (325 aa)
       
      0.502
fecR
Iron-dicitrate sensor, membrane component; Involved in fec operon regulation (319 aa)
   
 
  0.485
rseB
annotation not available (321 aa)
   
 
  0.457
IL1391
DNA-directed RNA polymerase specialized sigma subunit; Sigma E-like; Belongs to the sigma-70 factor family. ECF subfamily (206 aa)
   
          0.411
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1411 aa)
     
 
  0.401
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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