STRINGSTRING
ada protein (Idiomarina loihiensis) - STRING interaction network
"ada" - O6-methylguanine-DNA methyltransferase in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adaO6-methylguanine-DNA methyltransferase (280 aa)    
Predicted Functional Partners:
rpoD
DNA-directed RNA polymerase sigma 70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (609 aa)
     
 
  0.821
rpoS
DNA-directed RNA polymerase sigma 38 subunit (322 aa)
     
 
  0.654
polA
DNA polymerase I (921 aa)
     
 
  0.627
alkB
Alkylated DNA repair protein (217 aa)
   
   
  0.601
ushA
5’-nucleotidase (601 aa)
       
    0.538
rpoH
RNA polymerase factor sigma-32 (286 aa)
     
 
  0.512
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (211 aa)
         
  0.509
rpsP
Ribosomal protein S16 (82 aa)
 
          0.485
pheT
Phenylalanyl-tRNA synthetase beta subunit (795 aa)
              0.479
IL2076
Catabolite gene activator protein (212 aa)
   
          0.478
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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