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paaD protein (Idiomarina loihiensis) - STRING interaction network
"paaD" - Metal-sulfur cluster enzyme in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaDMetal-sulfur cluster enzyme (177 aa)    
Predicted Functional Partners:
IL0152
Cysteine desulfurase (416 aa)
 
        0.964
IL0154
Cysteine desulfurase (478 aa)
 
   
  0.953
sufC
Cysteine desulfurase (252 aa)
 
   
  0.945
csdA
Selenocysteine lyase/Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine (405 aa)
 
   
  0.910
sufA
Fe-S cluster assembly scaffold protein (118 aa)
 
          0.907
sufE
Cysteine desulfurase (138 aa)
 
          0.892
cysK
Cysteine synthase (350 aa)
       
    0.574
cysM
Cysteine synthase B (321 aa)
       
    0.574
serS
Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) (430 aa)
 
          0.472
IL2501
ferredoxin-NADP reductase (260 aa)
   
        0.406
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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