STRINGSTRING
IL0173 protein (Idiomarina loihiensis) - STRING interaction network
"IL0173" - RND superfamily exporter in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IL0173RND superfamily exporter (838 aa)    
Predicted Functional Partners:
IL0172
Hypothetical protein (266 aa)
          0.979
IL0171
Hypothetical protein (401 aa)
 
          0.975
IL0170
Hypothetical protein (72 aa)
 
          0.875
IL0169
ArsR family transcriptional regulator (103 aa)
              0.777
mnmC
Fused DadA-like amino acid oxidase domain/uncharacterized domain-containing protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 (606 aa)
     
        0.664
deoD
Purine-nucleoside phosphorylase (236 aa)
              0.638
IL2295
Lipoprotein (331 aa)
   
          0.613
IL1374
Hypothetical protein (449 aa)
 
        0.566
IL0168
Hypothetical protein (672 aa)
   
        0.552
IL0516
Hypothetical protein (626 aa)
 
        0.529
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (7%) [HD]