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comM protein (Idiomarina loihiensis) - STRING interaction network
"comM" - ATPase in Idiomarina loihiensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comMATPase (515 aa)    
Predicted Functional Partners:
def
N-formylmethionyl-tRNA deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (174 aa)
          0.885
smf
DNA uptake Rossmann fold nucleotide-binding protein (336 aa)
 
  0.870
IL0423
Endonuclease (116 aa)
 
        0.808
hemK
Hypothetical protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif (281 aa)
       
    0.671
comFC
Competence protein (229 aa)
 
   
  0.608
IL0214
Hypothetical protein (126 aa)
              0.580
prmB
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue (309 aa)
       
    0.559
IL2406
Rossmann fold nucleotide-binding protein (298 aa)
       
    0.555
IL0858
Nucleotide-binding domain-containing protein (451 aa)
       
    0.555
rpoD
DNA-directed RNA polymerase sigma 70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (609 aa)
         
  0.549
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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