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dinF protein (Idiomarina loihiensis) - STRING interaction network
"dinF" - Na+-driven multidrug efflux pump in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dinFNa+-driven multidrug efflux pump (440 aa)    
Predicted Functional Partners:
IL0251
Polysaccharide deacetylase (361 aa)
              0.663
IL0942
Phosphate starvation-inducible protein PhoH (329 aa)
       
      0.554
IL2569
Acyltransferase (303 aa)
     
    0.500
IL2144
Acyltransferase (200 aa)
     
    0.500
plsC
1-acyl-sn-glycerol-3-phosphate acyltransferase (246 aa)
     
    0.500
IL0126
1-acyl-sn-glycerol-3-phosphate acyltransferase (278 aa)
     
    0.500
astE
Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate (343 aa)
   
        0.480
ssb
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism (186 aa)
       
    0.443
IL1372
RND superfamily exporter (776 aa)
       
    0.436
IL0173
RND superfamily exporter (838 aa)
       
    0.436
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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