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IL0283 protein (Idiomarina loihiensis) - STRING interaction network
"IL0283" - Hypothetical protein in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IL0283Hypothetical protein (71 aa)    
Predicted Functional Partners:
IL0121
Hypothetical protein (151 aa)
   
          0.722
IL2416
Hypothetical protein (98 aa)
   
          0.625
IL0852
Hypothetical protein (103 aa)
   
          0.602
greB
GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreB releases sequences of up to 9 nucleotides in length (159 aa)
              0.579
IL0065
Transcription negative regulator (215 aa)
   
          0.547
IL2053
Redox protein (132 aa)
   
          0.505
IL0961
Hypothetical protein (130 aa)
   
          0.478
IL1817
Hypothetical protein (142 aa)
   
          0.472
IL1550
Flavoprotein oxygenase domain-containing protein (218 aa)
   
          0.468
tex
Transcriptional accessory protein (776 aa)
              0.455
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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