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mshN protein (Idiomarina loihiensis) - STRING interaction network
"mshN" - Hypothetical protein in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshNHypothetical protein (357 aa)    
Predicted Functional Partners:
mshL
Type II secretory pathway (557 aa)
 
     
  0.977
mshJ
Type II secretory pathway component (211 aa)
 
          0.971
IL0363
Type II secretory pathway component (303 aa)
 
          0.971
mshM
General secretion pathway ATPase (302 aa)
 
     
  0.962
mshG
Type II secretory pathway (412 aa)
 
     
  0.949
mshB
Pilin protein (201 aa)
 
          0.926
mshA
Type II secretory pathway, pseudopilin (170 aa)
 
     
  0.915
mshE
Type II secretory pathway, ATPase (571 aa)
 
          0.914
IL0364
Type II secretory pathway component (202 aa)
 
          0.908
mshO
Tfp-like pilus assembly protein (272 aa)
 
     
  0.901
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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