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mshC protein (Idiomarina loihiensis) - STRING interaction network
"mshC" - Type II secretory pathway component in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshCType II secretory pathway component (144 aa)    
Predicted Functional Partners:
mshD
Pilin protein (173 aa)
 
          0.950
mshO
Tfp-like pilus assembly protein (272 aa)
 
          0.942
mshP
Type II secretory pathway component (143 aa)
 
          0.889
mshQ
Type II secretory pathway component (1431 aa)
 
          0.882
mshB
Pilin protein (201 aa)
 
          0.861
mshN
Hypothetical protein (357 aa)
 
          0.808
IL0364
Type II secretory pathway component (202 aa)
 
          0.775
mshA
Type II secretory pathway, pseudopilin (170 aa)
 
          0.755
pulM
Type II secretory pathway, component PulM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (172 aa)
   
          0.736
IL1278
Hypothetical protein (75 aa)
   
          0.727
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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