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pmbA protein (Idiomarina loihiensis) - STRING interaction network
"pmbA" - Hypothetical protein in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmbAHypothetical protein (448 aa)    
Predicted Functional Partners:
IL0389
Hypothetical protein (171 aa)
   
        0.798
tldD
Zn-dependent protease (473 aa)
 
   
0.759
thiE
Thiamine monophosphate synthase (504 aa)
   
 
  0.591
IL0387
Amidohydrolase (265 aa)
   
   
  0.494
kdtA
3-deoxy-D-manno-octulosonic-acid transferase (661 aa)
     
      0.460
IL1186
NAD synthetase (543 aa)
   
        0.446
thiC
Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction (568 aa)
         
  0.445
rpoD
DNA-directed RNA polymerase sigma 70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (609 aa)
       
      0.426
rpoS
DNA-directed RNA polymerase sigma 38 subunit (322 aa)
       
      0.426
rpoH
RNA polymerase factor sigma-32 (286 aa)
       
      0.426
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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