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rpoN protein (Idiomarina loihiensis) - STRING interaction network
"rpoN" - RNA polymerase factor sigma-54 in Idiomarina loihiensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoNRNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (486 aa)    
Predicted Functional Partners:
pspF
Transcriptional regulator (358 aa)
 
 
 
  0.976
glnG
Nitrogen regulation protein (468 aa)
 
     
  0.954
IL2582
Response regulator (446 aa)
 
     
  0.954
IL1202
Flagellar biosynthesis protein (453 aa)
 
     
  0.953
hyfR
Response regulator of flagellar motility (478 aa)
 
     
  0.953
IL2061
Response regulator (441 aa)
 
     
  0.953
ptsN
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) (156 aa)
   
   
  0.944
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (329 aa)
     
 
  0.897
IL0401
Sugar phosphate isomerase (325 aa)
              0.890
rpoC
DNA-directed RNA polymerase beta’ subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1411 aa)
       
 
  0.883
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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