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IL0405 protein (Idiomarina loihiensis) - STRING interaction network
"IL0405" - Organic solvent ABC transporter substrate-binding protein in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IL0405Organic solvent ABC transporter substrate-binding protein (155 aa)    
Predicted Functional Partners:
IL0404
Organic solvent resistance ABC transporter permease (259 aa)
 
  0.999
IL0403
Organic solvent resistance ABC transporter ATPase (266 aa)
 
  0.999
IL0406
Organic solvent ABC transporter (223 aa)
 
 
  0.997
IL0407
STAS domain-containing protein (97 aa)
       
    0.959
IL0408
BolA family transcriptional regulator (84 aa)
   
        0.790
lptA
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm (180 aa)
 
          0.785
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine (419 aa)
   
        0.766
vacJ
Surface lipoprotein (248 aa)
 
     
  0.766
IL0401
Sugar phosphate isomerase (325 aa)
   
        0.720
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA (187 aa)
 
        0.703
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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