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IL0406 protein (Idiomarina loihiensis) - STRING interaction network
"IL0406" - Organic solvent ABC transporter in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IL0406Organic solvent ABC transporter (223 aa)    
Predicted Functional Partners:
IL0405
Organic solvent ABC transporter substrate-binding protein (155 aa)
 
 
  0.997
IL0404
Organic solvent resistance ABC transporter permease (259 aa)
 
 
  0.994
IL0403
Organic solvent resistance ABC transporter ATPase (266 aa)
 
 
  0.993
IL0407
STAS domain-containing protein (97 aa)
       
    0.970
IL0408
BolA family transcriptional regulator (84 aa)
   
   
  0.814
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine (419 aa)
   
        0.790
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA (187 aa)
 
        0.785
IL0401
Sugar phosphate isomerase (325 aa)
   
        0.710
vacJ
Surface lipoprotein (248 aa)
 
   
  0.695
proQ
solute/DNA competence effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities (208 aa)
   
          0.683
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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