STRINGSTRING
ampE protein (Idiomarina loihiensis) - STRING interaction network
"ampE" - Regulatory protein AmpE in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampERegulatory protein AmpE (274 aa)    
Predicted Functional Partners:
ampD
N-acetyl-anhydromuramyl-L-alanine amidase (182 aa)
   
   
  0.928
IL1269
Zn-ribbon protein (109 aa)
   
          0.769
IL0853
GNAT family acetyltransferase (226 aa)
   
          0.766
nadC
Nicotinate-nucleotide pyrophosphorylase (289 aa)
              0.738
IL0859
SmpA /OmlA family lipoprotein (128 aa)
   
          0.726
IL2345
Hypothetical protein (167 aa)
   
          0.718
miaE
tRNA-(ms[2]io[6]A)-hydroxylase (199 aa)
   
          0.711
IL0715
Hypothetical protein (146 aa)
   
          0.672
IL1285
Hypothetical protein (581 aa)
   
          0.665
IL0479
Hypothetical protein (124 aa)
   
          0.663
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (5%) [HD]