STRINGSTRING
IL0488 protein (Idiomarina loihiensis) - STRING interaction network
"IL0488" - Hypothetical protein in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IL0488Hypothetical protein (183 aa)    
Predicted Functional Partners:
cbiB
Cobalamin biosynthesis membrane protein (318 aa)
              0.777
folE2
GTP cyclohydrolase; Converts GTP to 7,8-dihydroneopterin triphosphate (308 aa)
 
          0.716
gsk
Ribokinase sugar kinase (336 aa)
     
      0.683
IL1875
Hypothetical protein (834 aa)
   
          0.667
IL1072
Glycosyltransferase (637 aa)
   
          0.646
IL1862
Hypothetical protein (91 aa)
   
          0.643
IL1519
Hypothetical protein (209 aa)
   
          0.621
IL1692
Hypothetical protein (406 aa)
   
          0.591
rpoC
DNA-directed RNA polymerase beta’ subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1411 aa)
     
 
  0.570
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (329 aa)
       
 
  0.565
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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