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rimK protein (Idiomarina loihiensis) - STRING interaction network
"rimK" - 30S ribosomal protein S6 in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimK30S ribosomal protein S6 (301 aa)    
Predicted Functional Partners:
IL0498
Aspartyl protease (140 aa)
          0.997
IL0496
aminoacylase-2/carboxypeptidase-Z family hydrolase (340 aa)
 
          0.977
IL0495
Signal transduction protein (118 aa)
              0.859
argG
Argininosuccinate synthase (403 aa)
         
  0.829
argC
Acetylglutamate semialdehyde dehydrogenase (341 aa)
         
  0.772
argB
Acetylglutamate kinase (243 aa)
         
  0.735
argH
Argininosuccinate lyase (620 aa)
         
  0.732
argD
Ornithine/acetylornithine aminotransferase (405 aa)
         
  0.638
ggt_2
Gamma-glutamyltranspeptidase (569 aa)
         
  0.636
ggt_1
Gamma-glutamyltranspeptidase (579 aa)
         
  0.636
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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