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IL0530 protein (Idiomarina loihiensis) - STRING interaction network
"IL0530" - Beta-lactamase fold exonuclease in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IL0530Beta-lactamase fold exonuclease (463 aa)    
Predicted Functional Partners:
IL2310
Hypothetical protein (331 aa)
     
      0.803
polA
DNA polymerase I (921 aa)
     
  0.778
IL2054
DNA ligase (291 aa)
   
  0.760
rpoC
DNA-directed RNA polymerase beta’ subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1411 aa)
     
    0.752
IL0531
Hypothetical protein (274 aa)
              0.745
IL0532
Hypothetical protein (61 aa)
              0.688
rhlB
ATP-dependent RNA helicase; DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA (425 aa)
   
    0.654
srmB
ATP-dependent RNA helicase; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity (409 aa)
   
    0.654
deaD
ATP-dependent RNA helicase (594 aa)
   
    0.654
rhlE
ATP-dependent RNA helicase (416 aa)
   
    0.654
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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