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intB protein (Idiomarina loihiensis) - STRING interaction network
"intB" - Integrase in Idiomarina loihiensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
intBIntegrase (436 aa)    
Predicted Functional Partners:
topA
Topoisomerase IA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoi [...] (872 aa)
   
   
  0.678
alpA
Prophage CP4-57 regulator (68 aa)
 
     
  0.677
IL0640
Transcriptional regulator (67 aa)
 
     
  0.640
hsdS
Restriction endonuclease S subunit (448 aa)
   
   
  0.522
truB
tRNA pseudouridine 5S synthase; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (310 aa)
   
        0.476
smf
DNA uptake Rossmann fold nucleotide-binding protein (336 aa)
 
          0.473
hisS
Histidyl-tRNA synthetase (415 aa)
     
      0.471
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP (525 aa)
         
  0.438
nadA
Quinolinate synthase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate (340 aa)
       
    0.436
nadD
Nicotinic acid mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) (209 aa)
         
    0.435
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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