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alkA protein (Idiomarina loihiensis) - STRING interaction network
"alkA" - 3-methyladenine DNA glycosylase in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkA3-methyladenine DNA glycosylase (197 aa)    
Predicted Functional Partners:
IL0656
TesB-like acyl-CoA thioesterase (264 aa)
              0.856
xthA
Exonuclease III (269 aa)
   
  0.838
IL0657
Zn-ribbon domain-containing protein (302 aa)
              0.753
polA
DNA polymerase I (921 aa)
   
 
  0.723
IL1993
NAD-dependent aldehyde dehydrogenase (457 aa)
     
 
    0.648
astD
Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate (489 aa)
     
 
    0.633
IL1992
Succinate-semialdehyde dehydrogenase (480 aa)
     
 
    0.633
gabD
Succinate-semialdehyde dehydrogenase (482 aa)
     
 
    0.633
mmsA
Methylmalonate-semialdehyde dehydrogenase (499 aa)
     
 
    0.633
IL0072
NAD-dependent aldehyde dehydrogenase (460 aa)
     
 
    0.633
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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