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hmgA protein (Idiomarina loihiensis) - STRING interaction network
"hmgA" - Homogentisate 1,2-dioxygenase in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmgAHomogentisate 1,2-dioxygenase (376 aa)    
Predicted Functional Partners:
IL0722
4-hydroxyphenylpyruvate dioxygenase (357 aa)
 
 
  0.999
IL0719
Glutathione S-transferase-like protein (212 aa)
 
 
  0.999
IL0720
2-keto-4-pentenoate hydratase (341 aa)
 
   
  0.979
IL0718
Dipeptidyl peptidase IV (827 aa)
              0.753
IL0725
Phenylalanine 4-monooxygenase (264 aa)
 
   
  0.742
IL0623
Glutathione S-transferase-like protein (221 aa)
   
 
  0.644
sspA
Glutathione S-transferase-like protein (207 aa)
   
 
  0.644
gst
Glutathione S-transferase (212 aa)
   
 
  0.644
IL0877
3-methylcrotonyl-CoA carboxylase subunit alpha (656 aa)
     
        0.591
tyrR
Aromatic amino acids metabolism transcriptional regulator (526 aa)
         
  0.533
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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