STRINGSTRING
pspF protein (Idiomarina loihiensis) - STRING interaction network
"pspF" - Transcriptional regulator in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspFTranscriptional regulator (358 aa)    
Predicted Functional Partners:
pspA
Phage shock protein A (224 aa)
 
 
 
  0.991
rpoN
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (486 aa)
 
 
 
  0.976
dppA
Peptide ABC transporter substrate-binding protein (541 aa)
              0.887
pspB
Phage shock protein B (80 aa)
 
     
  0.881
pspC
Stress-responsive transcriptional regulator (127 aa)
 
     
  0.881
dppB
Peptide ABC transporter permease (342 aa)
              0.870
sapF
Peptide ABC transporter ATPase (270 aa)
              0.758
sapD
Peptide ABC transporter ATPase (330 aa)
              0.758
sapC
Peptide ABC transporter permease (268 aa)
              0.758
putP
Na+/proline symporter (510 aa)
              0.586
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (6%) [HD]