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sapF protein (Idiomarina loihiensis) - STRING interaction network
"sapF" - Peptide ABC transporter ATPase in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sapFPeptide ABC transporter ATPase (270 aa)    
Predicted Functional Partners:
sapC
Peptide ABC transporter permease (268 aa)
 
  0.997
sapD
Peptide ABC transporter ATPase (330 aa)
 
 
0.994
dppA
Peptide ABC transporter substrate-binding protein (541 aa)
   
  0.988
dppB
Peptide ABC transporter permease (342 aa)
 
  0.988
putP
Na+/proline symporter (510 aa)
              0.779
pspF
Transcriptional regulator (358 aa)
              0.758
ggt_2
Gamma-glutamyltranspeptidase (569 aa)
              0.534
pspA
Phage shock protein A (224 aa)
              0.463
pspB
Phage shock protein B (80 aa)
              0.435
IL0728
ATPase (457 aa)
              0.435
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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