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rpoE protein (Idiomarina loihiensis) - STRING interaction network
"rpoE" - RNA polymerase sigma factor RpoE in Idiomarina loihiensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoERNA polymerase sigma factor RpoE (192 aa)    
Predicted Functional Partners:
rseB
Negative regulator of sigma E activity (321 aa)
 
 
  0.997
rseA
Negative regulator of sigma E activity; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic prote [...] (195 aa)
   
 
  0.996
rpoH
RNA polymerase factor sigma-32 (286 aa)
     
 
  0.924
rpoS
DNA-directed RNA polymerase sigma 38 subunit (322 aa)
     
 
  0.910
rseC
Positive regulator of sigma E activity (147 aa)
   
   
  0.881
degQ
Serine protease (451 aa)
   
   
  0.851
degS
Serine protease (349 aa)
   
   
  0.851
nadB
Aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate (533 aa)
         
  0.800
recO
Recombinational DNA repair protein RecO, RecF pathway; Involved in DNA repair and RecF pathway recombination (234 aa)
 
          0.798
rpoN
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (486 aa)
   
     
  0.778
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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