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xerD protein (Idiomarina loihiensis) - STRING interaction network
"xerD" - Site-specific recombinase in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDSite-specific recombinase (300 aa)    
Predicted Functional Partners:
xerC
Site-specific recombinase XerC (300 aa)
   
 
0.875
dsbC
Protein-disulfide isomerase (243 aa)
 
   
  0.841
recJ
Hypothetical protein (570 aa)
   
   
  0.797
aroB
3-dehydroquinate synthase (357 aa)
     
    0.743
ftsK
DNA translocase FtsK (801 aa)
   
 
 
  0.720
parA
Soj family ATPase (263 aa)
 
   
  0.642
recN
DNA repair ATPase RecN; May be involved in recombinational repair of damaged DNA (554 aa)
 
 
  0.625
IL1112
Soj family ATPase (258 aa)
 
   
  0.596
IL0827
Hypothetical protein (161 aa)
              0.590
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (339 aa)
 
   
  0.588
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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