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rlmM protein (Idiomarina loihiensis) - STRING interaction network
"rlmM" - RNA 2'-O-ribose methyltransferase in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmMRNA 2’-O-ribose methyltransferase; Catalyzes the 2’-O-methylation at nucleotide C2498 in 23S rRNA (369 aa)    
Predicted Functional Partners:
IL0864
Alpha/beta hydrolase (207 aa)
 
          0.925
IL0863
Hypothetical protein (126 aa)
   
        0.897
IL0865
DNA-binding transcriptional activator GcvA (299 aa)
   
        0.891
IL0677
Nucleoid-associated protein NdpA (347 aa)
   
          0.625
rlmD
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA (450 aa)
   
   
  0.622
IL0866
3-ketoacyl-ACP reductase (254 aa)
              0.595
mmsB
3-hydroxyisobutyrate dehydrogenase (298 aa)
              0.552
lppC
Lipoprotein (627 aa)
   
          0.506
IL0868
enoyl-CoA hydratase (373 aa)
              0.497
caiA
acyl-CoA dehydrogenase (385 aa)
              0.490
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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