STRINGSTRING
madN protein (Idiomarina loihiensis) - STRING interaction network
"madN" - Malonate decarboxylase Na+ pump in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
madNMalonate decarboxylase Na+ pump (292 aa)    
Predicted Functional Partners:
IL0868
enoyl-CoA hydratase (373 aa)
   
      0.661
mmsA
Methylmalonate-semialdehyde dehydrogenase (499 aa)
   
   
  0.657
IL2541
Multidrug ABC transporter ATPase and permease (610 aa)
     
      0.635
msbA
Multidrug ABC transporter ATPase and permease; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (582 aa)
     
      0.635
IL0540
Multidrug ABC transporter ATPase and permease (598 aa)
     
      0.635
caiA
acyl-CoA dehydrogenase (385 aa)
   
        0.632
IL0850
Hypothetical protein (114 aa)
   
          0.568
cdsA
CDP-diglyceride synthetase (287 aa)
   
      0.564
mmsB
3-hydroxyisobutyrate dehydrogenase (298 aa)
   
        0.562
IL0866
3-ketoacyl-ACP reductase (254 aa)
              0.515
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (4%) [HD]