STRINGSTRING
tadB protein (Idiomarina loihiensis) - STRING interaction network
"tadB" - Flp pilus assembly protein TadB in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadBFlp pilus assembly protein TadB (233 aa)    
Predicted Functional Partners:
tadC
Flp pilus assembly protein TadC (237 aa)
 
   
  0.956
IL0903
Flp pilus assembly protein CpaF (407 aa)
 
   
  0.949
IL0904
Flp pilus assembly protein CpaC (404 aa)
 
   
  0.942
IL0910
Flp/Fap pilin-like protein (92 aa)
 
          0.866
IL0909
Hypothetical protein (407 aa)
 
          0.844
IL0905
Flp pilus assembly protein CpaB (235 aa)
 
          0.716
IL0900
Hypothetical protein (130 aa)
              0.640
IL0899
Hypothetical protein (170 aa)
              0.640
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (4%) [HD]