Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Zinc-dependent peptidase (907 aa)
Predicted Functional Partners:
Outer membrane lipoprotein OmlA (small protein A); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (116 aa)
Hypothetical protein (202 aa)
Type II secretory pathway, component PulN (248 aa)
DNA repair ATPase RecN; May be involved in recombinational repair of damaged DNA (554 aa)
Hypothetical protein (294 aa)
Glycosyl transferase (343 aa)
Signal protein (1230 aa)
Pilin protein (173 aa)
Proline dipeptidase; Splits dipeptides with a prolyl residue in the C- terminal position (438 aa)
UbiH/Coq6 family FAD-binding oxidoreductase (392 aa)
Your Current Organism:
NCBI taxonomy Id: 283942 Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR