STRINGSTRING
miaE protein (Idiomarina loihiensis) - STRING interaction network
"miaE" - tRNA-(ms[2]io[6]A)-hydroxylase in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
miaEtRNA-(ms[2]io[6]A)-hydroxylase (199 aa)    
Predicted Functional Partners:
ampE
Regulatory protein AmpE (274 aa)
   
          0.711
IL1664
Hypothetical protein (249 aa)
   
          0.710
IL0853
GNAT family acetyltransferase (226 aa)
   
          0.634
IL1036
Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA (260 aa)
 
          0.630
IL1245
Hypothetical protein (117 aa)
   
        0.592
cyoA
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) (373 aa)
 
        0.579
astE
Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate (343 aa)
   
        0.555
IL1548
Hypothetical protein (104 aa)
   
          0.550
astB
Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)-succinylornithine, ammonia and CO(2) (447 aa)
   
          0.516
IL2317
Arginine N-succinyltransferase (340 aa)
   
        0.506
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (8%) [HD]