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sohB protein (Idiomarina loihiensis) - STRING interaction network
"sohB" - Peptidase S49 in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sohBPeptidase S49 (332 aa)    
Predicted Functional Partners:
IL1039
Alpha/beta hydrolase (821 aa)
              0.654
IL1037
Na+/H+ - glutamate/aspartate symport protein (427 aa)
              0.596
rsmJ
SAM-dependent methyltransferase; Specifically methylates the guanosine in position 1516 of 16S rRNA (263 aa)
   
          0.594
thiE
Thiamine monophosphate synthase (504 aa)
       
  0.586
polA
DNA polymerase I (921 aa)
   
   
  0.528
thiL
Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 (331 aa)
       
    0.512
IL1040
Short chain dehydrogenase (250 aa)
              0.487
cysK
Cysteine synthase (350 aa)
     
      0.469
cysM
Cysteine synthase B (321 aa)
     
      0.469
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (677 aa)
   
        0.468
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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