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STRINGSTRING
pal protein (Idiomarina loihiensis) - STRING interaction network
"pal" - annotation not available in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
palannotation not available (178 aa)    
Predicted Functional Partners:
tolB
Protein TolB; Involved in the TonB-independent uptake of proteins (449 aa)
 
  0.998
cpoB
Cell division coordinator CpoB; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division (253 aa)
 
 
  0.959
IL1083
TonB system biopolymer transport component; Similar to MotA/TolQ/ExbB family (236 aa)
 
 
  0.924
exbD
annotation not available (142 aa)
 
 
  0.891
IL1518
annotation not available (409 aa)
   
 
  0.807
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (833 aa)
   
 
  0.805
IL1516
annotation not available (411 aa)
   
 
  0.804
lolA
Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (200 aa)
 
 
  0.801
tolA
annotation not available (267 aa)
   
 
  0.792
rpmF
annotation not available (56 aa)
     
      0.692
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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