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pal protein (Idiomarina loihiensis) - STRING interaction network
"pal" - Peptidoglycan-associated lipoprotein in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
palPeptidoglycan-associated lipoprotein (178 aa)    
Predicted Functional Partners:
tolB
Translocation protein TolB; Involved in the TonB-independent uptake of proteins (449 aa)
 
  0.999
lolA
Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (200 aa)
     
 
  0.971
IL1083
TonB system biopolymer transport component (236 aa)
 
   
  0.971
IL1078
Hypothetical protein (253 aa)
 
        0.962
exbD
Biopolymer transport protein (142 aa)
 
 
  0.928
IL1516
Lipoprotein release ABC transporter permease (411 aa)
   
 
  0.921
IL1518
Lipoprotein release ABC transporter permease (409 aa)
   
 
  0.908
bamA
Surface antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (833 aa)
   
 
  0.891
tolA
TolA-like protein (267 aa)
   
        0.775
IL1127
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (174 aa)
 
 
  0.725
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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